Investigating the molecular mechanisms behind uncharacterized cysteine losses from prediction of their oxidation state

Here it is possible to download the full list of the cysteine oxidations predictions (due to intrachain disulfide bonds) produced by  D. Raimondi, G. Orlando and W. Vranken and presented in "Investigating the molecular mechanisms behind uncharacterized cysteine losses from prediction of their oxidation state" paper (under review).

Download the full list of predictions and HUMCYS dataset (text files) via this link.

The SVM+HMM (Support Vector Machine coupled with Hidden Markov Model) predictor is publicly available from our git repository:

git clone https://eddiewrc@bitbucket.org/eddiewrc/xhresmoi.git

A comprehensive README file will guide you through the installation. In the meanwhile, we would like to remind you that Xhresmoi requires hhblits and shogun toolbox.

For any problem contact the authors.